imprinted

Get pandas DataFrames with imprinted genes information

imprinted.get_imprinted(df_imprinted, ensembl='id', status_imprinted=True, status_predicted=False, status_unknown=False, expressed_allele_random=False, expressed_allele_unknown=False)

Parameters

ensembl: {False, True, ‘id’, ‘df’}

Whether to return Ensembl gene names instead of original gene names, if ‘id’ then Ensembl gene IDs are returned, if ‘df’ then the filtered pd.DataFrame is returned

status_imprinted: bool

Whether genes with status ‘Imprinted’ shall be returned

status_predicted: bool:

Whether genes with status ‘Predicted’ and ‘Provisional Data’ shall be returned

status_unknown: bool

Whether genes with status ‘Unknown’ and ‘Conflicting Data’ shall be returned

expressed_allele_random: bool

Whether genes with expressed allele ‘Random’ shall be returned

expressed_allele_unknown: bool

Whether genes with expressed allele ‘Unknown’, ‘NK’ and NaN shall be returned